27 Open Source Bioconductor Package Software Projects

A tool for the unsupervised clustering of cells from single cell RNA-Seq experiments

BASiCS: Bayesian Analysis of Single-Cell Sequencing Data. This is an unstable experimental version. Please see http://bioconductor.org/packages/BASiCS/ for the official release version

A tool for unsupervised projection of single cell RNA-seq data

Curated Metagenomic Data of the Human Microbiome

Copy number calling and variant classification using targeted short read sequencing

Bioconductor package for management of multi-assay data

Bioconductor facilities for parallel evaluation

Clone of the Bioconductor repository for the SingleCellExperiment package, see https://bioconductor.org/packages/devel/bioc/html/SingleCellExperiment.html for the official development version.

Clone of the Bioconductor repository for the scran package.

Clone of the Bioconductor repository for the DropletUtils package.

Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects

Enjoy your transcriptomic data and analysis responsibly - like sipping a cocktail

Representation and manipulation of genomic intervals

Efficient manipulation of biological strings

A unified framework for working transparently with on-disk and in-memory array-like datasets

Binary alignment (BAM), FASTA, variant call (BCF), and tabix file import

Foundation of integer range manipulation in Bioconductor

Foundation of vector-like and list-like containers in Bioconductor

Reproducible GSEA Benchmarking

Conveniently import and query gene models

SummarizedExperiment container

R package to access DoRothEA's regulons

A Shiny framework for workflow management and data visualization

Toolbox package for organizing and working with TCGA data

piano - An R/Bioconductor package for gene set analysis

Write CWL in R

Clone of the Bioconductor repository for the batchelor package.