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Bioconductor Package
21 Open Source Bioconductor Package Software Projects
Free and open source bioconductor package code projects including engines, APIs, generators, and tools.
Sc3
83 ⭐
A tool for the unsupervised clustering of cells from single cell RNA-Seq experiments
Catavallejos Basics
72 ⭐
BASiCS: Bayesian Analysis of Single-Cell Sequencing Data. This is an unstable experimental version. Please see http://bioconductor.org/packages/BASiCS/ for the official release version
Scmap
66 ⭐
A tool for unsupervised projection of single cell RNA-seq data
Curatedmetagenomicdata
64 ⭐
Curated and processed metagenomic data through ExperimentHub
Purecn
58 ⭐
Copy number calling and variant classification using targeted short read sequencing
Multiassayexperiment
47 ⭐
Bioconductor package for management of multi-assay data
Biocparallel
41 ⭐
Bioconductor facilities for parallel evaluation
Singlecellexperiment
39 ⭐
Clone of the Bioconductor repository for the SingleCellExperiment package, see https://bioconductor.org/packages/devel/bioc/html/SingleCellExperiment.html for the official development version.
Scran
32 ⭐
Clone of the Bioconductor repository for the scran package.
Dropletutils
32 ⭐
Clone of the Bioconductor repository for the DropletUtils package.
Curatedtcgadata
30 ⭐
Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects
Genetonic
29 ⭐
Enjoy your transcriptomic data and analysis responsibly - like sipping a cocktail
Genomicranges
23 ⭐
Representation and manipulation of genomic intervals
Biostrings
19 ⭐
Efficient manipulation of biological strings
Delayedarray
15 ⭐
A unified framework for working transparently with on-disk and in-memory array-like datasets
Rsamtools
14 ⭐
Binary alignment (BAM), FASTA, variant call (BCF), and tabix file import
Iranges
13 ⭐
Foundation of integer range manipulation in Bioconductor
S4vectors
11 ⭐
Foundation of vector-like and list-like containers in Bioconductor
Gseabenchmarker
10 ⭐
Reproducible GSEA Benchmarking
Genomicfeatures
10 ⭐
Conveniently import and query gene models
Summarizedexperiment
12 ⭐
SummarizedExperiment container