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Bioconductor Package
27 Open Source Bioconductor Package Software Projects
Free and open source bioconductor package code projects including engines, APIs, generators, and tools.
Sc3
99 ⭐
A tool for the unsupervised clustering of cells from single cell RNA-Seq experiments
Catavallejos Basics
74 ⭐
BASiCS: Bayesian Analysis of Single-Cell Sequencing Data. This is an unstable experimental version. Please see http://bioconductor.org/packages/BASiCS/ for the official release version
Scmap
75 ⭐
A tool for unsupervised projection of single cell RNA-seq data
Curatedmetagenomicdata
87 ⭐
Curated Metagenomic Data of the Human Microbiome
Purecn
80 ⭐
Copy number calling and variant classification using targeted short read sequencing
Multiassayexperiment
54 ⭐
Bioconductor package for management of multi-assay data
Biocparallel
51 ⭐
Bioconductor facilities for parallel evaluation
Singlecellexperiment
49 ⭐
Clone of the Bioconductor repository for the SingleCellExperiment package, see https://bioconductor.org/packages/devel/bioc/html/SingleCellExperiment.html for the official development version.
Scran
32 ⭐
Clone of the Bioconductor repository for the scran package.
Dropletutils
40 ⭐
Clone of the Bioconductor repository for the DropletUtils package.
Curatedtcgadata
32 ⭐
Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects
Genetonic
53 ⭐
Enjoy your transcriptomic data and analysis responsibly - like sipping a cocktail
Genomicranges
30 ⭐
Representation and manipulation of genomic intervals
Biostrings
24 ⭐
Efficient manipulation of biological strings
Delayedarray
20 ⭐
A unified framework for working transparently with on-disk and in-memory array-like datasets
Rsamtools
14 ⭐
Binary alignment (BAM), FASTA, variant call (BCF), and tabix file import
Iranges
15 ⭐
Foundation of integer range manipulation in Bioconductor
S4vectors
16 ⭐
Foundation of vector-like and list-like containers in Bioconductor
Gseabenchmarker
12 ⭐
Reproducible GSEA Benchmarking
Genomicfeatures
14 ⭐
Conveniently import and query gene models
Summarizedexperiment
18 ⭐
SummarizedExperiment container
Dorothea
64 ⭐
R package to access DoRothEA's regulons
Systempipeshiny
18 ⭐
A Shiny framework for workflow management and data visualization
Tcgautils
11 ⭐
Toolbox package for organizing and working with TCGA data
Varemo Piano
11 ⭐
piano - An R/Bioconductor package for gene set analysis
Rcwl
10 ⭐
Write CWL in R
Ltla Batchelor
10 ⭐
Clone of the Bioconductor repository for the batchelor package.