Open Source Libraries 👉Biodiversity

38 Open Source Biodiversity Software Projects

Free and open source biodiversity code projects including engines, APIs, generators, and tools.

Taxize 223 ⭐
A taxonomic toolbelt for R
Rgbif 118 ⭐
Interface to the Global Biodiversity Information Facility API
Globalbioticinteractions 79 ⭐
Global Biotic Interactions provides access to existing species interaction datasets
Prioritizr 75 ⭐
Systematic conservation prioritization in R
Catalogueoflife General 37 ⭐
The Catalogue of Life
Mapr 35 ⭐
Map species occurrence data
Taxonworks 57 ⭐
Workbench for biodiversity informatics.
Pygbif 38 ⭐
GBIF Python client
Python Dwca Reader 36 ⭐
🐍 A Python package to read Darwin Core Archive (DwC-A) files.
Scrubr 32 ⭐
Clean species occurrence records
Rbien 32 ⭐
Tools for accessing the Botanical Information and Ecology Network (BIEN) database
Rredlist 31 ⭐
IUCN Red List API Client
Ropensci Finch 19 ⭐
Read Darwin Core Archive files
Wdpar 27 ⭐
Interface to the World Database on Protected Areas
Hillr 23 ⭐
An R pakage to calculate diversity through Hill Numbers
Checklister 18 ⭐
Checklist generator
Mobr 16 ⭐
Tools for analyzing changes in diversity across scales
Diversity.jl 25 ⭐
Julia package for diversity measurement
Citynet 19 ⭐
A neural network classifier for urban soundscapes
Mobsim 13 ⭐
Spatial analysis and simulation of ecological communities
Rbison 10 ⭐
Wrapper to the USGS Bison API :warning: ABANDONED
Biodiversityobservationsminer 11 ⭐
A web application to unlock primary biodiversity data from published literature
Trefle API 387 ⭐
🍀 Trefle is a botanical JSON REST API for plants species, allowing you to search and query over all the registered species, and build the next gardening apps and farming robots.
Continuous Reforestation 156 ⭐
Make continuous reforestation part of your daily workflow :deciduous_tree:
Oztree 46 ⭐
OneZoom Tree of Life Explorer
Belugasounds 22 ⭐
Using machine learning to detect beluga whale calls in hydrophone recordings
Awesome Forests 30 ⭐
🌳 A curated list of ground-truth forest datasets for the machine learning and forestry community.
Rafagas 17 ⭐
Daily geospatial links curated by Raf Roset
Gnparser 21 ⭐
Ecosistem.jl 16 ⭐
Julia package for ecosystem simulation
Biodivmapr 16 ⭐
biodivMapR: an R package for α- and β-diversity mapping using remotely-sensed images
Gbif Dl 18 ⭐
GBIF classification dataloaders
Habitatmapping 14 ⭐
Code and data repository for creating a habitat type map
R Package 13 ⭐
Repository of the R-packageGen3sis
Geograph 12 ⭐
GeoGraph provides a tool for analysing habitat fragmentation and related problems in landscape ecology. GeoGraph builds a geospatially referenced graph from land cover or field survey data and enables graph-based landscape ecology analysis as well as interactive visualizations.
Ipybd 10 ⭐
Powerful Data Cleaner For Biodiversity
Biohubbc 10 ⭐
The source of BC’s species inventory data
Taxontabletools 10 ⭐
TaxonTableTools - A comprehensive, platform-independent graphical user interface software to explore and visualise DNA metabarcoding data