35 Open Source Biodiversity Software Projects

A taxonomic toolbelt for R

Interface to the Global Biodiversity Information Facility API

Global Biotic Interactions provides access to existing species interaction datasets

Systematic conservation prioritization in R

The Catalogue of Life

Map species occurrence data

Workbench for biodiversity informatics.

GBIF Python client

🐍 A Python package to read Darwin Core Archive (DwC-A) files.

Clean species occurrence records

Tools for accessing the Botanical Information and Ecology Network (BIEN) database

IUCN Red List API Client

Read Darwin Core Archive files

Interface to the World Database on Protected Areas

An R pakage to calculate diversity through Hill Numbers

Checklist generator

Tools for analyzing changes in diversity across scales

Julia package for diversity measurement

A neural network classifier for urban soundscapes

Spatial analysis and simulation of ecological communities

Wrapper to the USGS Bison API

A web application to unlock primary biodiversity data from published literature

🍀 Trefle is a botanical JSON REST API for plants species, allowing you to search and query over all the registered species, and build the next gardening apps and farming robots.

Make continuous reforestation part of your daily workflow :deciduous_tree:

OneZoom Tree of Life Explorer

Using machine learning to detect beluga whale calls in hydrophone recordings

🌳 A curated list of ground-truth forest datasets for the machine learning and forestry community.

Daily geospatial links curated by Raf Roset

Julia package for ecosystem simulation

biodivMapR: an R package for α- and β-diversity mapping using remotely-sensed images

GBIF classification dataloaders

Code and data repository for creating a habitat type map

Repository of the R-packageGen3sis

GeoGraph provides a tool for analysing habitat fragmentation and related problems in landscape ecology. GeoGraph builds a geospatially referenced graph from land cover or field survey data and enables graph-based landscape ecology analysis as well as interactive visualizations.