38 Open Source Biodiversity Software Projects

OneZoom Tree of Life Explorer

A web application to unlock primary biodiversity data from published literature

Interface to the World Database on Protected Areas

Workbench for biodiversity informatics.

A taxonomic toolbelt for R

🍀 Trefle is a botanical JSON REST API for plants species, allowing you to search and query over all the registered species, and build the next gardening apps and farming robots.

Powerful Data Cleaner For Biodiversity

biodivMapR: an R package for α- and β-diversity mapping using remotely-sensed images

Using machine learning to detect beluga whale calls in hydrophone recordings

Interface to the Global Biodiversity Information Facility API

Julia package for diversity measurement

Code and data repository for creating a habitat type map

TaxonTableTools - A comprehensive, platform-independent graphical user interface software to explore and visualise DNA metabarcoding data

Global Biotic Interactions provides access to existing species interaction datasets

Repository of the R-packageGen3sis

Julia package for ecosystem simulation

GBIF Python client

Read Darwin Core Archive files

The source of BC’s species inventory data

An R pakage to calculate diversity through Hill Numbers

GeoGraph provides a tool for analysing habitat fragmentation and related problems in landscape ecology. GeoGraph builds a geospatially referenced graph from land cover or field survey data and enables graph-based landscape ecology analysis as well as interactive visualizations.

GBIF classification dataloaders

Make continuous reforestation part of your daily workflow :deciduous_tree:

Tools for analyzing changes in diversity across scales

Daily geospatial links curated by Raf Roset

Map species occurrence data

🌳 A curated list of ground-truth forest datasets for the machine learning and forestry community.

A neural network classifier for urban soundscapes

Clean species occurrence records

Checklist generator

IUCN Red List API Client

Spatial analysis and simulation of ecological communities

Tools for accessing the Botanical Information and Ecology Network (BIEN) database

Systematic conservation prioritization in R

The Catalogue of Life

🐍 A Python package to read Darwin Core Archive (DwC-A) files.

Wrapper to the USGS Bison API :warning: ABANDONED