25 Open Source Bioinformatics Analysis Software Projects

Bioinformatics containers

GCP Essentials for Bioinformatics Researchers

An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.

BioContainers specifications

A comprehensive R package to construct interactive and reproducible biological data analysis applications based on the R platform

[DEPRECATED, see https://immunarch.com/] tcR: an R package for immune receptor repertoire advanced data analysis.

A modern genomics framework for julia

Bystro genetic analysis (annotation, filtering, statistics)

High-throughput gene to knowledge mapping through massive integration of public sequencing data.

An unsupervised transfer learning approach for rare disease transcriptomics

A collection of Web Service Clients to consume EBI's tools via REST and SOAP APIs.

Phigaro is a scalable command-line tool for predicting phages and prophages

BigWig manpulation tools using libBigWig and htslib

An easy-to-use way for running Galaxy workflows.

This is the main repository for the HackBio'2020 Virtual Internship Experience ❤️

GREIN : GEO RNA-seq Experiments Interactive Navigator

is an open-source LIMS (laboratory Information Management System) for Next Generation Sequencing sample management, statistics and reports, and bioinformatics analysis service management.

A suite of tools to explore protein structures with Protein Blocks :snake:

Plant Disease Identification Using Convulutional Neural Network

Colocalization analysis of genetic association signals

Pathogen-Host Analysis Tool - A modern Next-Generation Sequencing (NGS) analysis platform

Manuscript describing ChronQC is now available online in Bioinformatics

detecting Red Blood Cell with yolov2

NASQAR: A web-based platform for High-throughput sequencing data analysis and visualization

programs and scripts, mainly python, for analyses related to nucleic or protein sequences