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Bioinformatics Analysis
32 Open Source Bioinformatics Analysis Software Projects
Free and open source bioinformatics analysis code projects including engines, APIs, generators, and tools.
Biocontainers Containers
491 ⭐
Bioinformatics containers
Gcp For Bioinformatics
127 ⭐
GCP Essentials for Bioinformatics Researchers
Palimpsest
59 ⭐
An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.
Biocontainers Specs
44 ⭐
BioContainers specifications
Bioinstaller
45 ⭐
A comprehensive R package to construct interactive and reproducible biological data analysis applications based on the R platform
Tcr
35 ⭐
[DEPRECATED, see https://immunarch.com/] tcR: an R package for immune receptor repertoire advanced data analysis.
Genomegraphs.jl
46 ⭐
A modern genomics framework for julia
Bystro
30 ⭐
Bystro genetic analysis (annotation, filtering, statistics)
Skymap
29 ⭐
High-throughput gene to knowledge mapping through massive integration of public sequencing data.
Multi Plier
36 ⭐
An unsupervised transfer learning approach for rare disease transcriptomics
Webservice Clients
34 ⭐
A collection of Web Service Clients to consume EBI's tools via REST and SOAP APIs.
Phigaro
30 ⭐
Phigaro is a scalable command-line tool for predicting phages and prophages
Cgpbigwig
23 ⭐
BigWig manpulation tools using libBigWig and htslib
Galaksio
19 ⭐
An easy-to-use way for running Galaxy workflows.
Team Rosalind Project
22 ⭐
This is the main repository for the HackBio'2020 Virtual Internship Experience ❤️
Grein
33 ⭐
GREIN : GEO RNA-seq Experiments Interactive Navigator
Iskylims
31 ⭐
is an open-source LIMS (laboratory Information Management System) for Next Generation Sequencing sample management, statistics and reports, and bioinformatics analysis service management.
Pbxplore
19 ⭐
A suite of tools to explore protein structures with Protein Blocks :snake:
Plant Disease Identification Using Cnn
46 ⭐
Plant Disease Identification Using Convulutional Neural Network
Fastenloc
22 ⭐
Colocalization analysis of genetic association signals
Phat
17 ⭐
Pathogen-Host Analysis Tool - A modern Next-Generation Sequencing (NGS) analysis platform
Chronqc
15 ⭐
Manuscript describing ChronQC is now available online in Bioinformatics
Yolo2 Keras
15 ⭐
detecting Red Blood Cell with yolov2
Nasqar
22 ⭐
NASQAR: A web-based platform for High-throughput sequencing data analysis and visualization
Sequencework
18 ⭐
programs and scripts, mainly python, for analyses related to nucleic or protein sequences
Pyrpipe
45 ⭐
Reproducible bioinformatics pipelines in python. Import any Unix tool/command in python.
Grupo Estudo Bioinformatica
23 ⭐
Repositório do grupo de estudo de Bioinformática da rede de comunidades das PyLadies Brasil.
Nam Genomes
29 ⭐
Detailed bioinformatics scripts and methods used in the NAM genome paper.
Positive Selection
13 ⭐
Scripts and procedures for detecting positively selected genes and codons in primates
Reactomepy
11 ⭐
Explore biomolecular pathways in Reactome from the command-line or a Python script
Pyrice
10 ⭐
PyRice is an API to access some Rice public databases at the same time with consistent output. PyRice design is modular and implements a smart query system which fits the computing resources to optimize the query speed.
Pmoss
10 ⭐
pMoSS (p-value Model using the Sample Size) is a Python code to model the p-value as an n-dependent function using Monte Carlo cross-validation. Exploits the dependence on the sample size to characterize the differences among groups of large datasets