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Bioinformatics Analysis
25 Open Source Bioinformatics Analysis Software Projects
Free and open source bioinformatics analysis code projects including engines, APIs, generators, and tools.
Biocontainers Containers
415 ⭐
Bioinformatics containers
Gcp For Bioinformatics
84 ⭐
GCP Essentials for Bioinformatics Researchers
Palimpsest
54 ⭐
An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.
Biocontainers Specs
42 ⭐
BioContainers specifications
Bioinstaller
37 ⭐
A comprehensive R package to construct interactive and reproducible biological data analysis applications based on the R platform
Tcr
34 ⭐
[DEPRECATED, see https://immunarch.com/] tcR: an R package for immune receptor repertoire advanced data analysis.
Genomegraphs.jl
33 ⭐
A modern genomics framework for julia
Bystro
29 ⭐
Bystro genetic analysis (annotation, filtering, statistics)
Skymap
29 ⭐
High-throughput gene to knowledge mapping through massive integration of public sequencing data.
Multi Plier
28 ⭐
An unsupervised transfer learning approach for rare disease transcriptomics
Webservice Clients
24 ⭐
A collection of Web Service Clients to consume EBI's tools via REST and SOAP APIs.
Phigaro
24 ⭐
Phigaro is a scalable command-line tool for predicting phages and prophages
Cgpbigwig
21 ⭐
BigWig manpulation tools using libBigWig and htslib
Galaksio
19 ⭐
An easy-to-use way for running Galaxy workflows.
Team Rosalind Project
18 ⭐
This is the main repository for the HackBio'2020 Virtual Internship Experience ❤️
Grein
20 ⭐
GREIN : GEO RNA-seq Experiments Interactive Navigator
Iskylims
19 ⭐
is an open-source LIMS (laboratory Information Management System) for Next Generation Sequencing sample management, statistics and reports, and bioinformatics analysis service management.
Pbxplore
17 ⭐
A suite of tools to explore protein structures with Protein Blocks :snake:
Plant Disease Identification Using Cnn
21 ⭐
Plant Disease Identification Using Convulutional Neural Network
Fastenloc
15 ⭐
Colocalization analysis of genetic association signals
Phat
14 ⭐
Pathogen-Host Analysis Tool - A modern Next-Generation Sequencing (NGS) analysis platform
Chronqc
14 ⭐
Manuscript describing ChronQC is now available online in Bioinformatics
Yolo2 Keras
13 ⭐
detecting Red Blood Cell with yolov2
Nasqar
14 ⭐
NASQAR: A web-based platform for High-throughput sequencing data analysis and visualization
Sequencework
13 ⭐
programs and scripts, mainly python, for analyses related to nucleic or protein sequences