32 Open Source Bioinformatics Analysis Software Projects

Bioinformatics containers

GCP Essentials for Bioinformatics Researchers

An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.

BioContainers specifications

A comprehensive R package to construct interactive and reproducible biological data analysis applications based on the R platform

[DEPRECATED, see https://immunarch.com/] tcR: an R package for immune receptor repertoire advanced data analysis.

A modern genomics framework for julia

Bystro genetic analysis (annotation, filtering, statistics)

High-throughput gene to knowledge mapping through massive integration of public sequencing data.

An unsupervised transfer learning approach for rare disease transcriptomics

A collection of Web Service Clients to consume EBI's tools via REST and SOAP APIs.

Phigaro is a scalable command-line tool for predicting phages and prophages

BigWig manpulation tools using libBigWig and htslib

An easy-to-use way for running Galaxy workflows.

This is the main repository for the HackBio'2020 Virtual Internship Experience ❤️

GREIN : GEO RNA-seq Experiments Interactive Navigator

is an open-source LIMS (laboratory Information Management System) for Next Generation Sequencing sample management, statistics and reports, and bioinformatics analysis service management.

A suite of tools to explore protein structures with Protein Blocks :snake:

Plant Disease Identification Using Convulutional Neural Network

Colocalization analysis of genetic association signals

Pathogen-Host Analysis Tool - A modern Next-Generation Sequencing (NGS) analysis platform

Manuscript describing ChronQC is now available online in Bioinformatics

detecting Red Blood Cell with yolov2

NASQAR: A web-based platform for High-throughput sequencing data analysis and visualization

programs and scripts, mainly python, for analyses related to nucleic or protein sequences

Reproducible bioinformatics pipelines in python. Import any Unix tool/command in python.

Repositório do grupo de estudo de Bioinformática da rede de comunidades das PyLadies Brasil.

Detailed bioinformatics scripts and methods used in the NAM genome paper.

Scripts and procedures for detecting positively selected genes and codons in primates

Explore biomolecular pathways in Reactome from the command-line or a Python script

PyRice is an API to access some Rice public databases at the same time with consistent output. PyRice design is modular and implements a smart query system which fits the computing resources to optimize the query speed.

pMoSS (p-value Model using the Sample Size) is a Python code to model the p-value as an n-dependent function using Monte Carlo cross-validation. Exploits the dependence on the sample size to characterize the differences among groups of large datasets