Open Source Libs
Find Open Source Packages
Open Source Libraries
👉
Uncategorized
👉
Bioinformatics Tool
25 Open Source Bioinformatics Tool Software Projects
Free and open source bioinformatics tool code projects including engines, APIs, generators, and tools.
Abricate
131 ⭐
:mag_right: :pill: Mass screening of contigs for antimicrobial and virulence genes
Trimal
86 ⭐
A tool for automated alignment trimming in large-scale phylogenetic analyses. Development version: 2.0
Open Cravat
54 ⭐
A modular annotation tool for genomic variants
Mnnpy
38 ⭐
An implementation of MNN (Mutual Nearest Neighbors) correct in python.
Snakecharm
36 ⭐
Plugin for PyCharm / IntelliJ IDEA Platform IDEs which adds support for Snakemake language.
Fluentdna
33 ⭐
FluentDNA allows you to browse sequence data of any size using a zooming visualization similar to Google Maps. You can use FluentDNA as a standalone program or as a python module for your own bioinformatics projects.
Tigmint
33 ⭐
⛓ Correct misassemblies using linked AND long reads
Rna Bloom
31 ⭐
:hibiscus: lightweight transcriptome assembly for short reads and nanopore reads
Htstream
26 ⭐
A high throughput sequence read toolset using a streaming approach facilitated by Linux pipes
Lightdock
26 ⭐
Protein-protein, protein-peptide and protein-DNA docking framework based on the GSO algorithm
Metacache
23 ⭐
memory efficient, fast & precise taxnomomic classification system for metagenomic read mapping
Clincnv
23 ⭐
Detection of copy number changes in Germline/Trio/Somatic contexts in NGS data
Webservice Clients
24 ⭐
A collection of Web Service Clients to consume EBI's tools via REST and SOAP APIs.
Phigaro
24 ⭐
Phigaro is a scalable command-line tool for predicting phages and prophages
Covtobed
20 ⭐
covtobed | Convert the coverage track from a BAM file into a BED file
Mview
16 ⭐
MView extracts and reformats the results of a sequence database search or multiple alignment.
Nsga Ii
18 ⭐
an implementation of NSGA-II in java
Phat
14 ⭐
Pathogen-Host Analysis Tool - A modern Next-Generation Sequencing (NGS) analysis platform
Speciesprimer
11 ⭐
The SpeciesPrimer pipeline is intended to help researchers finding specific primer pairs for the detection and quantification of bacterial species in complex ecosystems.
Hmmhc
11 ⭐
MHC class II binding prediction
Biosmalltalk
10 ⭐
Bioinformatics Library for Pharo Smalltalk
Physlr
10 ⭐
:chains: Construct a Physical Map from Linked Reads
Sopang
10 ⭐
SOPanG, a simple tool for pattern matching over an elastic-degenerate string, a recently proposed simplified model for the pan-genome.
Deepcoil
10 ⭐
Fast and accurate prediction of coiled coil domains in protein sequences.
Guobioinfolab Catt
11 ⭐
An ultra-sensitive and precise tool for characterizing T cell CDR3 sequences in TCR-seq and RNA-seq data.