34 Open Source Bioinformatics Tool Software Projects
Free and open source bioinformatics tool code projects including engines, APIs, generators, and tools.
Trimal 98 ⭐
A tool for automated alignment trimming in large-scale phylogenetic analyses. Development version: 2.0
Snakecharm 43 ⭐
Plugin for PyCharm / IntelliJ IDEA Platform IDEs which adds support for Snakemake language.
Fluentdna 48 ⭐
FluentDNA allows you to browse sequence data of any size using a zooming visualization similar to Google Maps. You can use FluentDNA as a standalone program or as a python module for your own bioinformatics projects.
Htstream 34 ⭐
A high throughput sequence read toolset using a streaming approach facilitated by Linux pipes
Lightdock 58 ⭐
Protein-protein, protein-peptide and protein-DNA docking framework based on the GSO algorithm
Metacache 35 ⭐
memory efficient, fast & precise taxnomomic classification system for metagenomic read mapping
Webservice Clients 33 ⭐
A collection of Web Service Clients to consume EBI's tools via REST and SOAP APIs.
Mview 22 ⭐
MView extracts and reformats the results of a sequence database search or multiple alignment.
Speciesprimer 18 ⭐
The SpeciesPrimer pipeline is intended to help researchers finding specific primer pairs for the detection and quantification of bacterial species in complex ecosystems.
Sopang 11 ⭐
SOPanG, a simple tool for pattern matching over an elastic-degenerate string, a recently proposed simplified model for the pan-genome.
Guobioinfolab Catt 17 ⭐
An ultra-sensitive and precise tool for characterizing T cell CDR3 sequences in TCR-seq and RNA-seq data.
Ilearnplus 31 ⭐
iLearnPlus is the first machine-learning platform with both graphical- and web-based user interface that enables the construction of automated machine-learning pipelines for computational analysis and predictions using nucleic acid and protein sequences.
Biodiscml 16 ⭐
Large-scale automatic feature selection for biomarker discovery in high-dimensional OMICs data
Hlaclustrview 10 ⭐
R package specialized in HLA typing clustering and visualization based on specific similarity metrics