100 Open Source Biology Software Projects
Free and open source biology code projects including engines, APIs, generators, and tools.
Deepchem 2469 ⭐
Democratizing Deep-Learning for Drug Discovery, Quantum Chemistry, Materials Science and Biology
Dspp Keras 158 ⭐
Protein order and disorder data for Keras, Tensor Flow and Edward frameworks with automated update cycle made for continuous learning applications.
Catalyst.jl 131 ⭐
Chemical reaction network and systems biology interface for scientific machine learning (SciML). High performance, GPU-parallelized, and O(1) solvers in open source software
Sorgerlab Indra 96 ⭐
INDRA (Integrated Network and Dynamical Reasoning Assembler) is an automated model assembly system interfacing with NLP systems and databases to collect knowledge, and through a process of assembly, produce causal graphs and dynamical models.
Buddysuite 93 ⭐
Bioinformatics toolkits for manipulating sequence, alignment, and phylogenetic tree files
Pydna 70 ⭐
Double stranded DNA & simulation of homologous recombination, Gibson assembly, cut&paste cloning in Python and Jupyter notebooks
Globalbioticinteractions 62 ⭐
Global Biotic Interactions provides access to existing species interaction datasets
Clustergrammer2 57 ⭐
"Dimensionality-increasing" data visualization tool and interactive WebGL Jupyter widget built for single-cell data.
Cellcount 43 ⭐
A Convolutional Neural Network for Segmenting and Counting Cells in Microscopy Images
Pyfastx 40 ⭐
a python package for fast random access to sequences from plain and gzipped FASTA/Q files
Biostructures.jl 37 ⭐
A Julia package to read, write and manipulate macromolecular structures (particularly proteins)
Jonnew Cyclops 30 ⭐
Precision current source, with optional optical feedback, for driving LEDs and laser diodes
Python Bioimage Analysis Tutorial 27 ⭐
The new and improved 2018 version of the EMBL Python BioImage Analysis Tutorial. Now finally in python 3!
Forester 26 ⭐
forester is a collection of open source libraries of Java and Ruby software for phylogenomics and evolutionary biology research
Ibrahimtanyalcin Lexicon 24 ⭐
Data visualization library for creating interactive graphs and dashboards for bioinformatics etc.
Orthoevolution 22 ⭐
An easy to use and comprehensive python package which aids in the analysis and visualization of orthologous genes. 🐵
W17.machinelearning 20 ⭐
Course material for the Collaboratory Workshop "Machine Learning with Python"
Chise.js 14 ⭐
A web application to visualize and edit the pathway models represented by SBGN Process Description Notation
Gslcore 12 ⭐
Core library and basic plug-ins for the Amyris Genotype Specification Language (GSL) compiler.
Inter Climate_changes 10 ⭐
uma proposta de sequência didática interdisciplinar que tem como base as mudanças climáticas e aquecimento global
Awesome Biological Visualizations 27 ⭐
A list of web-based interactive biological data visualizations.