19 Open Source Biostatistics Software Projects
Free and open source biostatistics code projects including engines, APIs, generators, and tools.
A R package and executable for the preprocessing, statistical analysis, and downstream testing and visualization of differentially methylated regions (DMRs) from CpG count matrices (Bismark cytosine reports)
pMoSS (p-value Model using the Sample Size) is a Python code to model the p-value as an n-dependent function using Monte Carlo cross-validation. Exploits the dependence on the sample size to characterize the differences among groups of large datasets
VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.
R package for fitting joint models to time-to-event data and multivariate longitudinal data
Hruffieux Locus10 ⭐
locus R package - Large-scale variational inference for variable selection in sparse multiple-response regression