19 Open Source Biostatistics Software Projects

Open source bioinformatics and computational biology toolbox written in F#.

VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.

:green_book:handbook of biostatistic and R

Group sequential design for clinical trials

🎯 :closed_book: Targeted Learning in R: A Causal Data Science Handbook

Conquering confounds and covariates in machine learning

R package for High dimensional data analysis and integration with O2PLS!

Clinical Trial Simulations

SAS code snippets

R package for fitting joint models to time-to-event data and multivariate longitudinal data

The Trendiness of Trends

A R package and executable for the preprocessing, statistical analysis, and downstream testing and visualization of differentially methylated regions (DMRs) from CpG count matrices (Bismark cytosine reports)

A Python package for gene network analysis

Analysis of simulation studies including Monte Carlo error

R package for fitting joint models to time-to-event and longitudinal data

missing data handing: visualize and impute

Power and Sample Size Calculation

locus R package - Large-scale variational inference for variable selection in sparse multiple-response regression

pMoSS (p-value Model using the Sample Size) is a Python code to model the p-value as an n-dependent function using Monte Carlo cross-validation. Exploits the dependence on the sample size to characterize the differences among groups of large datasets