56 Open Source Cancer Software Projects
Free and open source cancer code projects including engines, APIs, generators, and tools.
Deepslide 278 ⭐
Code for the Nature Scientific Reports paper "Pathologist-level classification of histologic patterns on resected lung adenocarcinoma slides with deep neural networks." A sliding window framework for classification of high resolution whole-slide images, often microscopy or histopathology images.
Awesome Cancer Variant Databases 192 ⭐
A community-maintained repository of cancer clinical knowledge bases and databases focused on cancer variants.
Datamicroarray 79 ⭐
A collection of small-sample, high-dimensional microarray data sets to assess machine-learning algorithms and models.
Captk 80 ⭐
Cancer Imaging Phenomics Toolkit (CaPTk) is a software platform to perform image analysis and predictive modeling tasks. Documentation: https://cbica.github.io/CaPTk/
2020plus 39 ⭐
Classifies genes as an oncogene, tumor suppressor gene, or as a non-driver gene by using Random Forests
Cancer Donation Portal Python Flask App 28 ⭐
Bus Segmentation 29 ⭐
MATLAB implementation to segment breast lesions in ultrasound images (ICIAR 2016)
Awesome Biological Visualizations 27 ⭐
A list of web-based interactive biological data visualizations.
Ci4cc Informatics Resources 23 ⭐
Community-maintained list of resources that the CI4CC organization and the larger cancer informatics community have found useful or are developing.
Mageri 19 ⭐
MAGERI - Assemble, align and call variants for targeted genome re-sequencing with unique molecular identifiers
Lung Image Analysis 19 ⭐
A basic framework for pulmonary nodule detection and characterization in CT
Sigven Cacao 17 ⭐
Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer
Genome Transformer 15 ⭐
Predicting multiple cancer phenotypes based on somatic genomic alterations via the genomic impact transformer
Smartas 13 ⭐
📓Notebook of Climente-González et al. (2017), The Functional Impact of Alternative Splicing in Cancer.
Hyperfoods 16 ⭐
It was built a web application as a step forward in building a 3D recommendation system.
Lrgr Sigma 12 ⭐
SigMa is a probabilistic model for the sequential dependencies of mutation signatures
Msk Grail Techval 11 ⭐
High-intensity sequencing reveals the sources of plasma circulating cell-free DNA variants
Canreg5 12 ⭐
CanReg5 is a multi user, multi platform, open source tool to input, store, check and analyse cancer registry data.
Pfa Scannet 10 ⭐
PFA-ScanNet: Pyramidal Feature Aggregation with Synergistic Learning for Breast Cancer Metastasis Analysis
Ml Mt Webapp 19 ⭐
This project is all about a Machine Learning based Medical Test web app which makes predictions about various diseases using the concept of machine learning.
Rnaseq_titration_results 15 ⭐
Cross-platform normalization enables machine learning model training on microarray and RNA-seq data simultaneously