36 Open Source Chip Seq Software Projects
Free and open source chip seq code projects including engines, APIs, generators, and tools.
Dolphinnext 81 ⭐
A graphical user interface for distributed data processing of high throughput genomics
Reg Gen 63 ⭐
Regulatory Genomics Toolbox: Python library and set of tools for the integrative analysis of high throughput regulatory genomics data.
Haystack_bio 36 ⭐
Haystack: Epigenetic Variability and Transcription Factor Motifs Analysis Pipeline
Seq2science 80 ⭐
Automated and customizable preprocessing of Next-Generation Sequencing data, including full (sc)ATAC-seq, ChIP-seq, and (sc)RNA-seq workflows. Works equally easy with public as local data.
Bohdan Khomtchouk Microscope 20 ⭐
ChIP-seq/RNA-seq analysis software suite for gene expression heatmaps
Sevenc 11 ⭐
7C: Computational Chromosome Conformation Capture by Correlation of ChIP-seq at CTCF motifs
Ccbr Pipeliner 36 ⭐
An open-source and scalable solution to NGS analysis powered by the NIH's Biowulf cluster.
Ancetran 10 ⭐
AnceTran2.0: R package for transcriptome evolution analysis based on RNA-seq expression data or ChIP-seq TF-binding data