52 Open Source Cwl Software Projects

Repository for the CWL standards. Use https://cwl.discourse.group/ for support 😊

A scalable, efficient, cross-platform (Linux/macOS) and easy-to-use workflow engine in pure Python.

Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments

An open source platform for managing and analyzing biomedical big data

Common Workflow Language reference implementation

Visual and code editor for Common Workflow Language

Deprecated

Python package to extend Airflow functionality with CWL1.1 support

Cancer Imaging Phenomics Toolkit (CaPTk) is a software platform to perform image analysis and predictive modeling tasks. Documentation: https://cbica.github.io/CaPTk

Our VM/Docker sharing infrastructure and management component

[Legacy] Executor for CWL workflows. Executes sbg:draft-2 and CWL 1.0

REANA: Reusable research data analysis platform

A library for generating an interactive SVG visualization of CWL workflows

The WES API is a standard way to run and manage portable workflows.

Tibanna helps you run your genomic pipelines on Amazon cloud (AWS). It is used by the 4DN DCIC (4D Nucleome Data Coordination and Integration Center) to process data. Tibanna supports CWL/WDL (w/ docker), Snakemake (w/ conda) and custom Docker/shell command.

Create cwl workflows by writing a simple Python script

Typescript data model for Common Workflow Language

A language server for Common Workflow Language

CWL CommandLineTool descriptions for biology/life-sciences related applications

A new open source tool to run CWL workflows on LSF

NLP pipeline software using common workflow language

Command line tool to run batch jobs concurrently with ETL framework on AWS or other cloud computing resources

A web application to view and share Common Workflow Language workflows

[Experimental] Workflow Definition Language (WDL) to CWL

[Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows

APIs for discovering genomics tools, their metadata and their containers

CWL (and input file) parser for Golang, used by github.com/otiai10/yacle

CWL tools and workflows for GGR

Yet Another CWL Engine by Golang

An opinionated Cromwell orchestration manager.

Core consonance utilities for scheduling, reporting on, and provisioning VMs for workflows

cwl-tes submits your tasks to a TES server. Task submission is parallelized when possible.

CWL implementation of CloudNeo: A cloud pipeline for identifying patient-specific tumor neoantigens

CWL for GDC DNASeq workflows

The CWL v1.0 user guide

Reads the output from CLI help commands, and generates machine readable schemas (CWL etc)

Profile for provenance research object of a CWL workflow run

This project will have the files for a Cube Sat Telemetry system Using Raspberry Pi Transmitter Board

IPython2CWL is a tool for converting IPython Jupyter Notebooks to CWL Command Line Tools by simply providing typing annotation.

Seven Bridges Python library for programatic generation of CWL workflows.

VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies

Python 3.6+ utilities for CWL

Website user interface for Dockstore in Angular2

A bioinformatics pipeline for viral transcriptome detection and quantification considering splicing.

Create WDL documentation using Markdown.

Python library for RO-Crate

Bioinformatics workflows developed for and used on the St. Jude Cloud project.

Weaver: Workflow Execution Management Service (EMS); Application, Deployment and Execution Service (ADES)

Framework for testing CWL tools and workflows

Write CWL in R

WDL and CWL compiler for the DNAnexus platform