Open Source Libs
Find Open Source Packages
Open Source Libraries
👉
Cwl
52 Open Source Cwl Software Projects
Free and open source cwl code projects including engines, APIs, generators, and tools.
Common Workflow Language
1310 ⭐
Repository for the CWL standards. Use https://cwl.discourse.group/ for support 😊
Toil
777 ⭐
A scalable, efficient, cross-platform (Linux/macOS) and easy-to-use workflow engine in pure Python.
Cromwell
766 ⭐
Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments
Arvados
302 ⭐
An open source platform for managing and analyzing biomedical big data
Cwltool
268 ⭐
Common Workflow Language reference implementation
Rabix Composer
270 ⭐
Visual and code editor for Common Workflow Language
Common Workflow Library Legacy
98 ⭐
Deprecated
Cwl Airflow
146 ⭐
Python package to extend Airflow functionality with CWL1.1 support
Captk
124 ⭐
Cancer Imaging Phenomics Toolkit (CaPTk) is a software platform to perform image analysis and predictive modeling tasks. Documentation: https://cbica.github.io/CaPTk
Dockstore
88 ⭐
Our VM/Docker sharing infrastructure and management component
Rabix Bunny
72 ⭐
[Legacy] Executor for CWL workflows. Executes sbg:draft-2 and CWL 1.0
Reana
85 ⭐
REANA: Reusable research data analysis platform
Cwl SVG
66 ⭐
A library for generating an interactive SVG visualization of CWL workflows
Workflow Execution Service Schemas
62 ⭐
The WES API is a standard way to run and manage portable workflows.
Tibanna
59 ⭐
Tibanna helps you run your genomic pipelines on Amazon cloud (AWS). It is used by the 4DN DCIC (4D Nucleome Data Coordination and Integration Center) to process data. Tibanna supports CWL/WDL (w/ docker), Snakemake (w/ conda) and custom Docker/shell command.
Scriptcwl
39 ⭐
Create cwl workflows by writing a simple Python script
Cwl Ts
43 ⭐
Typescript data model for Common Workflow Language
Benten
50 ⭐
A language server for Common Workflow Language
Bio Cwl Tools
54 ⭐
CWL CommandLineTool descriptions for biology/life-sciences related applications
Cwlexec
34 ⭐
A new open source tool to run CWL workflows on LSF
Nlppln
33 ⭐
NLP pipeline software using common workflow language
Hotsub
27 ⭐
Command line tool to run batch jobs concurrently with ETL framework on AWS or other cloud computing resources
Cwlviewer
32 ⭐
A web application to view and share Common Workflow Language workflows
Wdl2cwl
26 ⭐
[Experimental] Workflow Definition Language (WDL) to CWL
Janis
31 ⭐
[Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows
Tool Registry Service Schemas
22 ⭐
APIs for discovering genomics tools, their metadata and their containers
Cwl.go
20 ⭐
CWL (and input file) parser for Golang, used by github.com/otiai10/yacle
Ggr Cwl
19 ⭐
CWL tools and workflows for GGR
Yacle
18 ⭐
Yet Another CWL Engine by Golang
Oliver
31 ⭐
An opinionated Cromwell orchestration manager.
Consonance
14 ⭐
Core consonance utilities for scheduling, reporting on, and provisioning VMs for workflows
Cwl Tes
14 ⭐
cwl-tes submits your tasks to a TES server. Task submission is parallelized when possible.
Cloudneo
17 ⭐
CWL implementation of CloudNeo: A cloud pipeline for identifying patient-specific tumor neoantigens
Gdc Dnaseq Cwl
17 ⭐
CWL for GDC DNASeq workflows
User_guide
19 ⭐
The CWL v1.0 user guide
Clihelpparser
14 ⭐
Reads the output from CLI help commands, and generates machine readable schemas (CWL etc)
Cwlprov
12 ⭐
Profile for provenance research object of a CWL workflow run
Raspberry_telemetry
14 ⭐
This project will have the files for a Cube Sat Telemetry system Using Raspberry Pi Transmitter Board
Ipython2cwl
15 ⭐
IPython2CWL is a tool for converting IPython Jupyter Notebooks to CWL Command Line Tools by simply providing typing annotation.
Virus_detection_sra
10 ⭐
Sevenbridges Cwl
16 ⭐
Seven Bridges Python library for programatic generation of CWL workflows.
Emg Viral Pipeline
28 ⭐
VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies
Cwl Utils
18 ⭐
Python 3.6+ utilities for CWL
Dockstore UI2
13 ⭐
Website user interface for Dockstore in Angular2
Virtus
28 ⭐
A bioinformatics pipeline for viral transcriptome detection and quantification considering splicing.
Wdldoc
20 ⭐
Create WDL documentation using Markdown.
Ro Crate Py
17 ⭐
Python library for RO-Crate
Stjudecloud Workflows
15 ⭐
Bioinformatics workflows developed for and used on the St. Jude Cloud project.
Crim Ca Weaver
15 ⭐
Weaver: Workflow Execution Management Service (EMS); Application, Deployment and Execution Service (ADES)
Cwltest
11 ⭐
Framework for testing CWL tools and workflows
Rcwl
10 ⭐
Write CWL in R
Dxcompiler
14 ⭐
WDL and CWL compiler for the DNAnexus platform