45 Open Source Cwl Software Projects
Free and open source cwl code projects including engines, APIs, generators, and tools.
Common Workflow Language 1177 ⭐
Repository for the CWL standards. Use https://cwl.discourse.group/ for support 😊
Toil 703 ⭐
A scalable, efficient, cross-platform (Linux/macOS) and easy-to-use workflow engine in pure Python.
Cromwell 605 ⭐
Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments
Captk 80 ⭐
Cancer Imaging Phenomics Toolkit (CaPTk) is a software platform to perform image analysis and predictive modeling tasks. Documentation: https://cbica.github.io/CaPTk/
Workflow Execution Service Schemas 50 ⭐
The WES API is a standard way to run and manage portable workflows.
Tibanna 51 ⭐
Tibanna helps you run your genomic pipelines on Amazon cloud (AWS). It is used by the 4DN DCIC (4D Nucleome Data Coordination and Integration Center) to process data. Tibanna supports CWL/WDL (w/ docker), Snakemake (w/ conda) and custom Docker/shell command.
Hotsub 25 ⭐
Command line tool to run batch jobs concurrently with ETL framework on AWS or other cloud computing resources
Tool Registry Service Schemas 19 ⭐
APIs for discovering genomics tools, their metadata and their containers
Consonance 13 ⭐
Core consonance utilities for scheduling, reporting on, and provisioning VMs for workflows
Cwl Tes 13 ⭐
cwl-tes submits your tasks to a TES server. Task submission is parallelized when possible.
Cloudneo 13 ⭐
CWL implementation of CloudNeo: A cloud pipeline for identifying patient-specific tumor neoantigens
Clihelpparser 12 ⭐
Library for reading the output from CLI help commands, and generating machine readable schemas (CWL etc)
Raspberry_telemetry 11 ⭐
This project will have the files for a Cube Sat Telemetry system Using Raspberry Pi Transmitter Board
Ipython2cwl 13 ⭐
IPython2CWL is a tool for converting IPython Jupyter Notebooks to CWL Command Line Tools by simply providing typing annotation.
Emg Viral Pipeline 13 ⭐
VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies