52 Open Source Epidemiology Software Projects
Free and open source epidemiology code projects including engines, APIs, generators, and tools.
Awesome Coronavirus 1313 ⭐
🦠 Huge collection of useful projects and resources for COVID-19 (2019 novel Coronavirus)
Seirsplus 443 ⭐
Models of SEIRS epidemic dynamics with extensions, including network-structured populations, testing, contact tracing, and social distancing.
Covid 19 Electronic Health System Corona Tracker 235 ⭐
An easy-to-use PWA to monitor the user's wellness and learn about COVID-19.
Pm_covid 73 ⭐
Public Available Code and Data to Reproduce Analyses in "Exposure to air pollution and COVID-19 mortality in the United States".
Python For Epidemiologists 69 ⭐
Tutorial in Python targeted at Epidemiologists. Will discuss the basics of analysis in Python 3
Sars2pack 41 ⭐
An R package with nearly 40 highly cited, read-to-use, up-to-date COVID-19 pandemic data resources
Farolcovid 33 ⭐
🚦🏥. Ferramenta de monitoramento do risco de colapso no sistema de saúde em municípios brasileiros com a Covid-19 • Monitoring tool & simulation of the risk of collapse in Brazilian municipalities' health system due to Covid-19
Circuitscape.jl 38 ⭐
Algorithms from circuit theory to predict connectivity in heterogeneous landscapes
Epitator 31 ⭐
EpiTator annotates epidemiological information in text documents. It is the natural language processing framework that powers GRITS and EIDR Connect.
Chronological Map Phenotypes 22 ⭐
Machine-readable version of electronic health record phenotypes for Kuan V. and Denaxas S. et al.
Covid19 Analytics 20 ⭐
Analysis of the COVID19 outbreak in Brazil mainly through epidemic and hospitalization models, by the Health Analytics and Prospera consulting business units of Funcional Heatlh Tech.
Covid Agent Based Model 22 ⭐
Disease propagation ABM generating SIR, severe cases, and R0 over quasi-time.
Mtbseq_source 17 ⭐
MTBseq is an automated pipeline for mapping, variant calling and detection of resistance mediating and phylogenetic variants from illumina whole genome sequence data of Mycobacterium tuberculosis complex isolates.
Lisphilar Covid19 Sir 17 ⭐
CovsirPhy: Python package for COVID-19 analysis with phase-dependent SIR-derived ODE models.
Covid19 Webinar 10 ⭐
A Tutorial on Modelling Number of Infected Cases in Turkey of COVID-19 Using Machine Learning & AI
Globaldothealth List 10 ⭐
Repository for Global.health: a data science initiative to enable rapid sharing of trusted and open public health data to advance the response to infectious diseases.
Covid19_npi_china 10 ⭐
Code for: The effect of human mobility and control measures on the COVID-19 epidemic in China