91 Open Source Evolution Software Projects
Free and open source evolution code projects including engines, APIs, generators, and tools.
A toolkit for annotation of transposable element families from unassembled sequence reads
A public python implementation of the DeepHyperNEAT system for evolving neural networks. Developed by Felix Sosa and Kenneth Stanley. See paper here: https://eplex.cs.ucf.edu/papers/sosa_ugrad_report18.pdf
EvoDynamic seeks to evolve and develop suitable discrete dynamic models of self-organizing systems based on local interactions.
Unix History Make270 ⭐
Code and data to create a git repository representing the Unix source code history
Kmer Homology Paper12 ⭐
Manuscript for functional prediction of transcriptomic “dark matter” across species
Hardware and software for accessible, extensible, and scalable bioreactors. Built on Raspberry Pi.
Command-line program to wrap dagchainer and combine pairwise results into multi-alignments in column format
Implementation of SharpNEAT in Unity 2020. Full refactor of the UnityNEAT project.
A Python API for estimating statistical high-order epistasis in genotype-phenotype maps.
forester is a collection of open source libraries of Java and Ruby software for phylogenomics and evolutionary biology research
Simulation, visualization, and inference tools for modelling the spread of infectious diseases with Julia
Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data
Quota Alignment48 ⭐
Guided synteny alignment between duplicated genomes (within specified quota constraint)
Cellsim 230 ⭐
Simulating complete lives of different cellular animals and plants. Evolution, inheritance, predation and more.
Archaeopteryx JS27 ⭐
Archaeopteryx.js is a software tool for the visualization and analysis of highly annotated phylogenetic trees.
Bot Evolution136 ⭐
An interesting display of evolution through neural networks and a genetic algorithm
A tool to extract and visualize the results of CAFE (Computational Analysis of gene Family Evolution)
Positive Selection13 ⭐
Scripts and procedures for detecting positively selected genes and codons in primates