56 Open Source Fasta Software Projects
Free and open source fasta code projects including engines, APIs, generators, and tools.
Seqan3 245 ⭐
The modern C++ library for sequence analysis. Contains version 3 of the library and API docs.
Vcf2phylip 154 ⭐
Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis
Redundans 84 ⭐
Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes.
Pyfastx 112 ⭐
a python package for fast random access to sequences from plain and gzipped FASTA/Q files
Fluentdna 50 ⭐
FluentDNA allows you to browse sequence data of any size using a zooming visualization similar to Google Maps. You can use FluentDNA as a standalone program or as a python module for your own bioinformatics projects.
Genozip 68 ⭐
Compressor for genomic files (FASTQ, SAM/BAM, VCF, FASTA, GVF, 23andMe...), up to 5x better than gzip and faster too
Metacache 39 ⭐
memory efficient, fast & precise taxnomomic classification system for metagenomic read mapping
Goalign 44 ⭐
Goalign is a set of command line tools and an API to manipulate multiple alignments. It is implemented in Go language.
Mview 22 ⭐
MView extracts and reformats the results of a sequence database search or multiple alignment.
Scanpav 18 ⭐
Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.
Sequence Database Curator 13 ⭐
This program dereplicates and/or filter nucleotide and/or protein database from a list of names or sequences (by exact match).
Multisub 28 ⭐
Prepares a SARS-CoV-2 submission for GISAID, NCBI or ENA. Can read GISAID or NCBI files, or plain fasta+tsv/csv/xls. Finds files in input directory and merges everything into a single output directory. Auto-detects input file formats. Can submit the results to multiple repositories from the command line.
Iquasere Recognizer 10 ⭐
A tool for domain based annotation with databases from the Conserved Domains Database