63 Open Source Gwas Software Projects
Free and open source gwas code projects including engines, APIs, generators, and tools.
Prsice 123 ⭐
A software package for calculating, applying, evaluating and plotting the results of polygenic risk scores
Locuszoom 113 ⭐
Locuscomparer 34 ⭐
LocusCompareR is a R package with visualization tools for comparing two genetic association datasets.
Tiledb Vcf 39 ⭐
Efficient variant-call data storage and retrieval library using the TileDB storage library.
Gor 25 ⭐
GORpipe is a tool based on a genomic ordered relational architecture and allows analysis of large sets of genomic and phenotypic tabular data using declarative query language, in a parallel execution engine.
Gchromvar 28 ⭐
Cell type specific enrichments using finemapped variants and quantitative epigenetic data
S Pcgc 14 ⭐
Heritability, genetic correlation and functional enrichment estimation for case-control studies
Ldblockshow 66 ⭐
LDBlockShow: a fast and convenient tool for visualizing linkage disequilibrium and haplotype blocks based on VCF files
Echolocator 13 ⭐
Automated statistical and functional fine-mapping pipeline with extensive API access to datasets.
Metausat 11 ⭐
metaUSAT is a data-adaptive statistical approach for testing genetic associations of multiple traits from single/multiple studies using univariate GWAS summary statistics.
Locusexplorer 11 ⭐
An interactive graphical illustration of genetic associations and their biological context
Knockoffgwas 12 ⭐
A flexible tool for the multi-resolution localization of causal variants across the genome, accounting for population structure.
Gwas Pipeline 15 ⭐
This is a general (somewhat comprehensive) description of the LNG GWAS pipeline which can be used to guide researchers on how-to run a GWAS.
Multiskat 10 ⭐
MultiSKAT is an R-package focused at rare-variant analysis of continuous multiple phenotype data. This project contains the R-codes/functions (including an example dataset) to carry out the MultiSKAT tests.
Imputationserver 40 ⭐
Michigan Imputation Server: A new web-based service for imputation that facilitates access to new reference panels and greatly improves user experience and productivity