33 Open Source Markov Chain Monte Carlo Software Projects
Free and open source markov chain monte carlo code projects including engines, APIs, generators, and tools.
Wiseodd Mcmc 256 ⭐
Collection of Monte Carlo (MC) and Markov Chain Monte Carlo (MCMC) algorithms applied on simple examples.
Mrbayes 159 ⭐
MrBayes is a program for Bayesian inference and model choice across a wide range of phylogenetic and evolutionary models. For documentation and downloading the program, please see the home page:
Openmmtools 128 ⭐
A batteries-included toolkit for the GPU-accelerated OpenMM molecular simulation engine.
Pdsampler.jl 29 ⭐
Piecewise Deterministic Sampler library (Bouncy particle sampler, Zig Zag sampler, ...)
Littlemcmc 44 ⭐
A lightweight and performant implementation of HMC and NUTS in Python, spun out of the PyMC project.
Rhat_ess 24 ⭐
Rank-normalization, folding, and localization: An improved R-hat for assessing convergence of MCMC
Paulocarvalhorj Gammaray 17 ⭐
Repository of the GammaRay geomodeling software. New in August, 2nd: several new methods to work with grids.
Zigzagboomerang.jl 58 ⭐
Sleek implementations of the ZigZag, Boomerang and other assorted piecewise deterministic Markov processes for Markov Chain Monte Carlo including Sticky PDMPs for variable selection