67 Open Source Medical Image Analysis Software Projects
Free and open source medical image analysis code projects including engines, APIs, generators, and tools.
Niftynet 1295 ⭐
[unmaintained] An open-source convolutional neural networks platform for research in medical image analysis and image-guided therapy
Medicaldetectiontoolkit 1081 ⭐
The Medical Detection Toolkit contains 2D + 3D implementations of prevalent object detectors such as Mask R-CNN, Retina Net, Retina U-Net, as well as a training and inference framework focused on dealing with medical images.
Breast_cancer_classifier 699 ⭐
Deep Neural Networks Improve Radiologists' Performance in Breast Cancer Screening
Deepslide 361 ⭐
Code for the Nature Scientific Reports paper "Pathologist-level classification of histologic patterns on resected lung adenocarcinoma slides with deep neural networks." A sliding window framework for classification of high resolution whole-slide images, often microscopy or histopathology images.
Fewshot_gan Unet3D 308 ⭐
Tensorflow implementation of our paper: Few-shot 3D Multi-modal Medical Image Segmentation using Generative Adversarial Learning
Miscnn 280 ⭐
A framework for Medical Image Segmentation with Convolutional Neural Networks and Deep Learning
Livianet 153 ⭐
This repository contains the code of LiviaNET, a 3D fully convolutional neural network that was employed in our work: "3D fully convolutional networks for subcortical segmentation in MRI: A large-scale study"
Hyperdensenet 132 ⭐
This repository contains the code of HyperDenseNet, a hyper-densely connected CNN to segment medical images in multi-modal image scenarios.
Deepbrainseg 125 ⭐
Fully automatic brain tumour segmentation using Deep 3-D convolutional neural networks
Pneumonia Detection From Chest X Ray Images With Deep Learning 78 ⭐
Detecting Pneumonia in Chest X-ray Images using Convolutional Neural Network and Pretrained Models
Histogan 66 ⭐
Code for "Generative Image Translation for Data Augmentation in Colorectal Histopathology Images" full paper at ML4H Workshop at NeurIPS 2019.
Multi Scale Curriculum 31 ⭐
Code for Paper: Multi Scale Curriculum CNN for Context-Aware Breast MRI Malignancy Classification
Regrcnn 39 ⭐
This repository holds the code framework used in the paper Reg R-CNN: Lesion Detection and Grading under Noisy Labels. It is a fork of MIC-DKFZ/medicaldetectiontoolkit with regression capabilites.
Optic Disk Cup Segmentation 31 ⭐
Optic Disc and Optic Cup Segmentation using 57 layered deep convolutional neural network
2018 Data Science Bowl 14 ⭐
Kaggle Competitions: Find the nuclei in divergent images to advance medical discovery
Cup And Disc Segmentation For Glaucoma Detection Cdr Calculation 20 ⭐
An adaptive threshold based algorithm for optic disc and cup segmentation in fundus images
Fetal Distress Classification 14 ⭐
Project to save innocent infant lives using Cardiotocography and CNN image classification
Cancer Detection From Microscopic Tissue Images With Deep Learning 17 ⭐
Cancer Detection from Microscopic Images by Fine-tuning Pre-trained Models ("Inception") for new class labels
Capsule Networks Medical Data Challenges 12 ⭐
"Capsule Networks against Medical Imaging Data Challenges" - [email protected] 2018
Pymia 45 ⭐
pymia: A Python package for data handling and evaluation in deep learning-based medical image analysis
Covid19.miscnn 59 ⭐
Robust Chest CT Image Segmentation of COVID-19 Lung Infection based on limited data
Medmnist 534 ⭐
18 MNIST-like Datasets for 2D and 3D Biomedical Image Classification: pip install medmnist
Medical Transformer 447 ⭐
Official Pytorch Code for "Medical Transformer: Gated Axial-Attention for Medical Image Segmentation" - MICCAI 2021
Pykale 321 ⭐
Knowledge-Aware machine LEarning (KALE): accessible machine learning from multiple sources for interdisciplinary research, part of the 🔥PyTorch ecosystem
Covidprognosis 145 ⭐
COVID deterioration prediction based on chest X-ray radiographs via MoCo-trained image representations
Transformer_for_medical_image_analysis 209 ⭐
A collection of papers about Transformer in the field of medical image analysis.
Covid 19_prognosis 31 ⭐
An artificial intelligence system for predicting the deterioration of COVID-19 patients in the emergency department
3D Medical Imaging Preprocessing All You Need 38 ⭐
This Repo Will contain the Preprocessing Code for 3D Medical Imaging
3Dmrisegmentation 20 ⭐
Code for NeuroImage: Clinical paper "Automatic post-stroke lesion segmentation on MR images using 3D residual convolutional neural network."
Rvgan 37 ⭐
[MICCAI'21] [Tensorflow] Retinal Vessel Segmentation using a Novel Multi-scale Generative Adversarial Network
Ocular Disease Intelligent Recognition Deep Learning 22 ⭐
ODIR-2019. Ocular Disease Intelligent Recognition Through Deep Learning Architectures
Xreg 25 ⭐
Library and executables for modeling and registration applications in medical image analysis. Particular emphasis on intraoperative fluoroscopic (X-ray) navigation via 2D/3D registration.
Nyukat Glam 19 ⭐
Weakly-supervised High-resolution Segmentation of Mammography Images for Breast Cancer Diagnosis
Radiomics Features Extractor 25 ⭐
Hand-crafted radiomics and deep learning-based radiomcis features extraction.
O Medal 12 ⭐
O-MedAL: Online Active Deep Learning for Medical Image Analysis. This repo contains code for the paper.
Pramod04121999 Brain Tumor Segmentation 14 ⭐
Fully automatic brain tumor segmentation using the Modified 3DUNet architecture for Brats 2020 Challenge.
Stratified K Fold Cross Validation Image Classification Keras 14 ⭐
This python program demonstrates image classification with stratified k-fold cross validation technique.
Radiomics Research By Using Python 13 ⭐
Radiomics (here mainly means hand-crafted based radiomics) contains data acquire, ROI segmentation, feature extraction, feature selection, machine learning modeling, and stastical analysis.
Ccd 21 ⭐
Code for 'Constrained Contrastive Distribution Learning for Unsupervised Anomaly Detection and Localisation in Medical Images' [MICCAI 2021]
Riadd.aucmedi 10 ⭐
Multi-Disease Detection in Retinal Imaging based on Ensembling Heterogeneous Deep Learning Models
Lesion Based Contrastive Learning 13 ⭐
This is the official implementation of the paper Lesion-based Contrastive Learning for Diabetic Retinopathy Grading from Fundus Images.
Awesome Transformers In Medical Imaging 102 ⭐
A collection of resources on applications of Transformers in Medical Imaging.
Mid Dran 10 ⭐
This is the official implementation of state-of-the-art medical image denoising method titled as "Dynamic Residual Attention Network (DRAN)".
Improved Bagan Gp 10 ⭐
Generate high quality images for each class even with an imbalanced dataset. An improved version of Balancing GAN.