116 Open Source Medical Image Processing Software Projects
Free and open source medical image processing code projects including engines, APIs, generators, and tools.
Viewers 1793 ⭐
OHIF zero-footprint DICOM viewer and oncology specific Lesion Tracker, plus shared extension packages
Niftynet 1295 ⭐
[unmaintained] An open-source convolutional neural networks platform for research in medical image analysis and image-guided therapy
Medicaldetectiontoolkit 1081 ⭐
The Medical Detection Toolkit contains 2D + 3D implementations of prevalent object detectors such as Mask R-CNN, Retina Net, Retina U-Net, as well as a training and inference framework focused on dealing with medical images.
Medicalzoopytorch 889 ⭐
A pytorch-based deep learning framework for multi-modal 2D/3D medical image segmentation
3D Mri Brain Tumor Segmentation Using Autoencoder Regularization 279 ⭐
Keras implementation of the paper "3D MRI brain tumor segmentation using autoencoder regularization" by Myronenko A. (https://arxiv.org/abs/1810.11654).
Miscnn 280 ⭐
A framework for Medical Image Segmentation with Convolutional Neural Networks and Deep Learning
Livianet 153 ⭐
This repository contains the code of LiviaNET, a 3D fully convolutional neural network that was employed in our work: "3D fully convolutional networks for subcortical segmentation in MRI: A large-scale study"
Hyperdensenet 132 ⭐
This repository contains the code of HyperDenseNet, a hyper-densely connected CNN to segment medical images in multi-modal image scenarios.
Retina Features 101 ⭐
Project for segmentation of blood vessels, microaneurysm and hardexudates in fundus images.
X Ray Classification 85 ⭐
X-ray Images (Chest images) analysis and anomaly detection using Transfer learning with inception v2
Captk 124 ⭐
Cancer Imaging Phenomics Toolkit (CaPTk) is a software platform to perform image analysis and predictive modeling tasks. Documentation: https://cbica.github.io/CaPTk
Pneumonia Detection From Chest X Ray Images With Deep Learning 78 ⭐
Detecting Pneumonia in Chest X-ray Images using Convolutional Neural Network and Pretrained Models
Semidensenet 52 ⭐
Repository containing the code of one of the networks that we employed in the iSEG Grand MICCAI Challenge 2017, infant brain segmentation.
Medicalimagesegmentation 52 ⭐
This repository aims at containing all the code employed at LIVIA to segment medical images. Mainly, our research focuses on bringind the expertise in deep learning and optimization techniques to the medical image analysis domain.
Hyperdensenet_pytorch 58 ⭐
Pytorch version of the HyperDenseNet deep neural network for multi-modal image segmentation
Brain Tumor Detection In 3D Mris Using Dcgan 45 ⭐
Using DCGAN for segmenting brain tumors from brain image scans
Melanoma Recognition 44 ⭐
Repository of paper "Automated Melanoma Recognition in Dermoscopy Images via Very Deep Residual Networks"
Ivd Net 44 ⭐
Repository containing the source code of the IVD-Net segmentation network that we proposed for the MICCAI 2018 IVD segmentation challenge.
Rivuletpy 42 ⭐
Robust 3D Neuron Tracing / General 3D tree structure extraction in Python for 3D images powered by the Rivulet2 algorithm. Pain-free Install & use in 5 mins.
Regrcnn 39 ⭐
This repository holds the code framework used in the paper Reg R-CNN: Lesion Detection and Grading under Noisy Labels. It is a fork of MIC-DKFZ/medicaldetectiontoolkit with regression capabilites.
Coronary Artery Tracking Via 3D Cnn Classification 93 ⭐
The PyTorch re-implement of a 3D CNN Tracker to extract coronary artery centerlines with state-of-the-art (SOTA) performance. (paper: 'Coronary artery centerline extraction in cardiac CT angiography using a CNN-based orientation classiﬁer')
Deep Lesion 28 ⭐
A deep learning framework for detecting lesions in CT scans from Deep Lesion dataset
Dermatron 19 ⭐
Dermatology focused medical records software, augmented with computer vision and artificial intelligence [Meteor packaged with Electron]
Lungsegmentation 21 ⭐
This was my research project at IIT Bombay on Lung Segmentation from Chest X-Rays Images
Cup And Disc Segmentation For Glaucoma Detection Cdr Calculation 20 ⭐
An adaptive threshold based algorithm for optic disc and cup segmentation in fundus images
Mrqy 44 ⭐
MRQy is a quality assurance and checking tool for quantitative assessment of magnetic resonance imaging (MRI) data.
Focuslitenn 24 ⭐
Official PyTorch and MATLAB implementations of our MICCAI 2020 paper "FocusLiteNN: High Efficiency Focus Quality Assessment for Digital Pathology"
Large Scale Multi Class Image Based Cell Classification With Deep Learning 15 ⭐
Large-Scale Multi-Class Image-Based Cell Classification with Deep Learning
Cancer Detection From Microscopic Tissue Images With Deep Learning 17 ⭐
Cancer Detection from Microscopic Images by Fine-tuning Pre-trained Models ("Inception") for new class labels
Thyroid Us 26 ⭐
Evaluation of Thyroid Nodules Seen on Ultrasound Using Multi-task Deep Convolutional Neural Network (CNN)
Chainer Skin Lesion Detector 11 ⭐
Skin Lesion Detector using HAM10000 dataset with Chainer / ChainerCV
Capsnetslaseg 18 ⭐
Capsule Networks and Convolutional Neural Networks for the Automated Segmentation of Left Atrium in Cardiac MRI
Classification On Chest X Ray Diagnosis Images 13 ⭐
Identifying Medical Diagnoses and Treatable Diseases using pre-trained VGGNet with PyTorch on GPU.
Luna16 40 ⭐
Developing a well-documented repository for the Lung Nodule Detection task on the Luna16 dataset. This work is inspired by the ideas of the first-placed team at DSB2017, "grt123".
Covid Cxnet 45 ⭐
COVID-CXNet: Diagnosing COVID-19 in Frontal Chest X-ray Images using Deep Learning. Preprint available on arXiv: https://arxiv.org/abs/2006.13807
Pytorch Medical Segmentation 433 ⭐
This repository is an unoffical PyTorch implementation of Medical segmentation in 2D and 3D.
Paperweekly 151 ⭐
Papers for CNN, object detection, keypoint detection, semantic segmentation, medical image processing, SLAM, etc.
Transformer_for_medical_image_analysis 209 ⭐
A collection of papers about Transformer in the field of medical image analysis.
Kaapana 67 ⭐
Kaapana (from the hawaiian word kaʻāpana, meaning “distributor” or “part”) is an open source toolkit for state of the art platform provisioning in the field of medical data analysis. The applications comprise AI-based workflows and federated learning scenarios with a focus on radiological and radiotherapeutic imaging.
Covid19.miscnn 59 ⭐
Robust Chest CT Image Segmentation of COVID-19 Lung Infection based on limited data
Coursera Ai For Medicine Specialization 64 ⭐
Programming assignments, labs and quizzes from all courses in the Coursera AI for Medicine Specialization offered by deeplearning.ai
Rt Utils 56 ⭐
A minimal Python library to facilitate the creation and manipulation of DICOM RTStructs.
Covid Caps 40 ⭐
A Capsule Network-based framework for identification of COVID-19 cases from chest X-ray Images
Enochkan Vox2vox 38 ⭐
3D volume-to-volume generative adversarial network for medical image segmentation
AsclepIOS Dicom Viewer 41 ⭐
Bachelor's thesis project. Bachelor thesis project. A DICOM Viewer written in C++, QT and VTK.
3D Medical Imaging Preprocessing All You Need 38 ⭐
This Repo Will contain the Preprocessing Code for 3D Medical Imaging
Octproz 26 ⭐
OCTproZ is an open source software for optical coherence tomography processing and visualization.
Segretino 22 ⭐
An implementation of the research paper "Retina Blood Vessel Segmentation Using A U-Net Based Convolutional Neural Network"
Private Ml For Health 21 ⭐
Dopamine: Differentially Private Federated Learning on Medical Data (AAAI - PPAI)
Itktubetk 24 ⭐
TubeTK is an open-source toolkit for the segmentation, registration, and analysis of tubes and surfaces in images, developed by Kitware, Inc.
Attentiondeeplabv3p 20 ⭐
Attention Deeplabv3+: Multi-level Context Attention Mechanism for Skin Lesion Segmentation
Medvision 20 ⭐
Medical Image Vision Operators, such as RoIAlign, DCNv1, DCNv2 and NMS for both 2/3D images.
Miccai Educational Challenge 2019 14 ⭐
Tutorial about combining PyTorch and NiftyNet for deep learning and medical image computing