103 Open Source Open Science Software Projects
Free and open source open science code projects including engines, APIs, generators, and tools.
Itk 741 ⭐
Insight Toolkit (ITK) -- Official Repository. ITK builds on a proven, spatially-oriented architecture for processing, segmentation, and registration of scientific images in two, three, or more dimensions.
Awesome Open Geoscience 574 ⭐
Curated from repositories that make our lives as geoscientists, hackers and data wranglers easier or just more awesome
Pyvista 548 ⭐
3D plotting and mesh analysis through a streamlined interface for the Visualization Toolkit (VTK)
Anonymous_github 416 ⭐
Anonymous Github is a proxy server to support anonymous browsing of Github repositories for open-science code and data.
Anahita 360 ⭐
Anahita is a platform and framework for developing open science and knowledge sharing applications on a social networking foundation.
Ck 358 ⭐
Collective Knowledge framework (CK) helps to organize any software project as a database of reusable components with common automation actions and extensible meta descriptions based on FAIR principles (findability, accessibility, interoperability, and reusability). See real-world use cases from Arm, General Motors, IBM, RPi, ACM, and MLPerf:
Repairnator 329 ⭐
Software development bot that automatically repairs build failures on continuous integration. Join the bot revolution! :star2::robot::star2::revolving_hearts:
Food Inspections Evaluation 297 ⭐
This repository contains the code to generate predictions of critical violations at food establishments in Chicago. It also contains the results of an evaluation of the effectiveness of those predictions.
Itkwidgets 292 ⭐
Interactive Jupyter widgets to visualize images, point sets, and meshes in 2D and 3D
Simpeg 245 ⭐
Simulation and Parameter Estimation in Geophysics - A python package for simulation and gradient based parameter estimation in the context of geophysical applications.
Tomviz 208 ⭐
Cross platform, open source application for the processing, visualization, and analysis of 3D tomography data
Open Computational Neuroscience Resources 181 ⭐
A publicly-editable collection of open computational neuroscience resources
Pycbc 167 ⭐
Core package to analyze gravitational-wave data, find signals, and study their parameters. This package was used in the first direct detection of gravitational waves (GW150914), and is used in the ongoing analysis of LIGO/Virgo data.
Avogadrolibs 146 ⭐
Avogadro libraries provide 3D rendering, visualization, analysis and data processing useful in computational chemistry, molecular modeling, bioinformatics, materials science, and related areas.
Electrophysiologydata 123 ⭐
A list of openly available datasets in (mostly human) electrophysiology.
Reproducible Research 91 ⭐
A Reproducible Data Analysis Workflow with R Markdown, Git, Make, and Docker
Awesome Open Science Software 82 ⭐
awesome open list of pointers about open science for software and computational science
Simon Frontend 79 ⭐
:chart: SIMON is powerful, flexible, open-source and easy to use machine learning knowledge discovery platform :computer:
Obofoundry.github.io 82 ⭐
Metadata and website for the Open Bio Ontologies Foundry Ontology Registry
Avogadroapp 65 ⭐
Avogadro is an advanced molecular editor designed for cross-platform use in computational chemistry, molecular modeling, bioinformatics, materials science, and related areas.
Module 5 Open Research Software And Open Source 60 ⭐
Module 5: Open Research Software and Open Source
Clear Water 53 ⭐
Forecasting elevated levels of E. coli at Chicago beaches to provide proper warning to beach-goers.
Open Science Resources 53 ⭐
A publicly-editable collection of open science resources, including tools, datasets, meta-resources, etc.
Electrophysiologysoftware 50 ⭐
A list of openly available software tools for (mostly human) electrophysiology.
Doathon 43 ⭐
Our discussion forum (see "issues") for the OpenCon Do-A-Thon, a day of trying, making, testing and doing to advance Open Research & Education. See our full website, with more information (including Github Help, and how to get involved).
Ten Simple Rules Dockerfiles 39 ⭐
Ten Simple Rules for Writing Dockerfiles for Reproducible Data Science
Defects4j Dissection 31 ⭐
Defects4J Dissection presents data to help researchers and practitioners to better understand the Defects4J bug dataset
Pyrdm 27 ⭐
PyRDM is a Python-based library for research data management (RDM). It facilitates the automated publication of scientific software and associated input and output data.
Mozilla Sprint 2018 24 ⭐
DEPRECATED & Materials Moved: This sprint was to focus on brainstorming for the Joint Roadmap for Open Science Tools.
Open Data Lab 24 ⭐
an initiative to provide infrastructure for reproducible workflows around open data
Clowder 23 ⭐
This is being migrated to a new github organization to help enable grouping clowder and all related repositories.
Defects4j Repair 22 ⭐
Open-science repo for our experimental results of automatic software repair on the Defects4J benchmark of Java bugs
How To Read A Research Compendium 20 ⭐
"How to Read a Research Compendium" - based on S. Keshav's "How to Read a Paper"
Paper Moho Inversion Tesseroids 17 ⭐
Source code, data, and model results for "Fast non-linear gravity inversion in spherical coordinates with application to the South American Moho". Published in the Geophysical Journal International.
Openscience 17 ⭐
Empirical Software Engineering journal (EMSE) open science and reproducible research initiative
Reproducibility_in_plant_pathology 15 ⭐
A systematic/quantitative review of articles, which will provide a basis for identifying what has been done so far in the field of plant pathology research.
Inferring Hidden Structure Retinal Circuits 13 ⭐
Data and example scripts used in the paper `Inferring hidden structure in multilayered neural circuits`
Reproguide Curate 11 ⭐
Curating Research Assets in Behavioral Sciences: A tutorial on organizing and curating research materials using RStudio & the Git version control system
Mahr Edwards 2017 10 ⭐
Mahr and Edwards (2018). Using Language Input and Lexical Processing to Predict Vocabulary Size
Awesome Open Science 10 ⭐
:books: :microscope: :unlock: :mag: A curated list of resources, data, tools, scholarship related to Open Access, Data and Open Science :books: :microscope: :unlock: :mag: